Add a batch of publications from spreadsheet

Add a batch of publications from spreadsheet

Usage

add_publications_from_file(
  file,
  publication_table_id,
  study_table_id,
  list_sep = "|",
  dry_run = TRUE
)

Arguments

file

Spreadsheet (.csv/.tsv) with pubs to add should have pmid, studyId, diseaseFocus, manifestation. pmid is one per row and unique, rest can be list_sep vals.

publication_table_id

Synapse id of the portal publication table. Must have write access.

study_table_id

Synapse id of the portal study table. Need read access.

list_sep

Delimiter character used to separate list columns.

dry_run

Default = TRUE. Skips upload to table and instead prints formatted publication metadata.