Export and add mutations data to cBioPortal dataset

This should be run in an existing dataset package root.

Usage

cbp_add_maf(maf_data, verbose = TRUE)

Arguments

maf_data

Synapse id of merged maf file for public release.

verbose

Whether to be chatty.

Details

Get merged maf file that represents filtered subset of mafs containing only (non-germline) data OK to release publicly. This needs to be packaged with other files like this example of a public mutations dataset.