Map sample input-output — map_sample

Wrapper to map sample inputs and outputs depending on workflow type.

Usage

map_sample_io(
  workflow = c("nf-rnaseq", "nf-sarek"),
  samplesheet,
  syn_out,
  sample_level = 2
)

workflow: Workflow.
samplesheet: A local file or syn id of samplesheet.
syn_out: Syn id of syn output destination with files of interest.
sample_level: If caller is organized by sample, use 2 (default), if samples organized by caller, use 3. See details.

A table with sample

level

output_id

output_name

input_id.