Map sample to output from nf-rnaseq — map_sample_output

See https://nf-co.re/rnaseq. Given location where workflow has deposited the outputs, map relevant processed files based on extensions and link these files to source samples. So for results/star_salmon/<sample>/<file>, the URI to pass in is the star_salmon folder. Warning: Reliance on certain file structure and naming convention can make this somewhat brittle!

Usage

map_sample_output_rnaseq(syn_out)

Arguments

syn_out: Syn id of syn output destination with files of interest.

Value

A data.table with cols output_name

output_id

sample

workflow

Details

See the related map_sample_input_ss for mapping sample to inputs instead of outputs.