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Annotate CNV outputs from CNVKit

Source: R/nextflow_annotation_utils.R
annotate_cnv.Rd

Annotate CNV outputs from CNVKit

Usage

annotate_cnv(
  output_dataset,
  input_dataset,
  workflow = "CNVkit",
  workflowLink = "https://nf-co.re/sarek/3.1/docs/output#cnvkit",
  dry_run = TRUE
)

Arguments

output_dataset

Id of dataset, which should be created first via nf_cnv_dataset.

input_dataset

Input dataset used in the workflow.

workflow

Optional name for workflow, defaults to CNVkit.

Optional corresponding link to workflow, defaults to known used version.

dry_run

Whether to return a version submit manifest.