Skip to contents

Annotate processed expression output

Source: R/nextflow_annotation_utils.R
annotate_expression.Rd

Annotate processed expression output

Usage

annotate_expression(
  sample_io,
  template = "bts:ProcessedExpressionTemplate",
  schema =
    "https://raw.githubusercontent.com/nf-osi/nf-metadata-dictionary/main/NF.jsonld",
  verbose = TRUE,
  dry_run = TRUE
)

Arguments

sample_io

Table mapping input to outputs, where outputs are expected to be .sf files.

template

(Optional) URI of template in data model to use, prefixed if needed. Can specify different model/version, but in some cases may not work well.

schema

Path (URL or local) to file from which schema will be read, or schema as list object.

verbose

Give verbose reports for what's happening.

dry_run

Whether to apply annotations.