Annotate processed aligned reads — annotate_aligned

Given a manifest, annotate data as aligned reads data. Returns a "partial" manifest, which can be adjusted as needed, e.g. add additional comments or batch info.

Usage

annotate_aligned_reads(
  metadata,
  workflow_link,
  genomic_reference = "GRCh38",
  verbose = TRUE
)

Arguments

metadata: Metadata table to build upon.
workflow_link: Workflow link to most specific part of workflow generating these data.
genomic_reference: For aligned reads, genomic reference meta should be present; defaults to GRCh38.
verbose: Give verbose reports for what's happening.