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Make annotations from samtools stats

Source: R/nextflow_annotation_utils.R
annotate_with_samtools_stats.Rd

Extracts a subset of samtools stats Regarding the selection of stats, see the Genomic Data Commons (GDC) model for AlignedReads

Usage

annotate_with_samtools_stats(meta, samtools_stats_file = NULL)

Arguments

meta

Data to which tool stats will be added as additional meta.

samtools_stats_file

Path to file/syn id of file with samtools stats produced by the workflow.