Summarize data types for the study — assign_study_data

Data types are summarized, or "rolled-up", for the study based on its child file annotations. Summary values are added back as and overwrites the current dataType annotation for the study. See also the related update_study_annotations, where study-level annotations are rolled down to child files. Note that under-the-hood this now wraps a generalized util summarize_attribute.

Usage

assign_study_data_types(
  study_table_id,
  fileview_id,
  id_col = "studyId",
  attribute = "dataType",
  dry_run = TRUE
)

Arguments

study_table_id: Synapse ID of reference portal study table. Used to get study ids.
fileview_id: Synapse ID of the reference portal fileview.
id_col: Name of the study id column in study_table_id and fileview_id. Defaults to studyId.
attribute: Attribute being summarized using fileview. Defaults to dataType.
dry_run: Default = TRUE. Whether to update as well or just return list of annotation objects.

Value

List of annotations objects.

Examples

if (FALSE) { # \dontrun{
assign_study_data_types(study_table_id = 'syn52694652',
                        fileview_id = 'syn16858331',
                        id_col = 'studyId',
                        attribute = 'dataType',
                        dry_run = T)
} # }