Find a standard nextflow workflow output asset — find_nf

Note that samplesheets became part of the output only for newer versions of nf-core/rna-seq; older runs may not find samplesheets. Paths default to known working paths corresponding to the latest major workflow version, but this may change and may need to be updated as part of util maintenance.

Usage

find_nf_asset(
  syn_out,
  asset = c("software_versions", "multiqc_report", "samplesheet", "samtools_stats"),
  workflow = "rna-seq"
)

Arguments

syn_out: Id of top-level folder that corresponds to publishDir in a nextflow workflow.
asset: Name of asset to find.
workflow: Specify workflow, "rna-seq" or "sarek"; defaults to "rna-seq"

Value

Id of samplesheet.