See schematic manifest generation.
Note that this uses the access token of user that should already be logged in with syn_login.
Usage
manifest_generate(
data_type,
dataset_id = NULL,
title = data_type,
schema_url =
"https://raw.githubusercontent.com/nf-osi/nf-metadata-dictionary/main/NF.jsonld",
asset_view = "syn16858331",
output_format = "google_sheet",
use_annotations = TRUE,
service = "https://schematic.api.sagebionetworks.org/v1/manifest/generate"
)Arguments
- data_type
Data type of the manifest to generate (aka Component).
- dataset_id
Optional, if given this fills out manifest for existing dataset instead of generating a blank manifest.
- title
Optional, custom title.
- schema_url
Optional, defaults to main NF 'latest' data model.
- asset_view
Optional, defaults to main NF portal fileview.
- output_format
Format of 'excel', 'google_sheet', or 'dataframe'. Defaults to 'excel'.
- use_annotations
Use annotations if filling out manifest for existing dataset. Defaults to TRUE for NF.
- service
Service endpoint to use. Defaults to the schematic production endpoint.